Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language
نویسندگان
چکیده
منابع مشابه
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2
The number, size and complexity of computational models of biological systems are growing at an ever increasing pace. It is imperative to build on existing studies by reusing and adapting existing models and parts thereof. The description of the structure of models is not sufficient to enable the reproduction of simulation results. One also needs to describe the procedures the models are subjec...
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UNLABELLED The simulation experiment description markup language (SED-ML) is a new community data standard to encode computational biology experiments in a computer-readable XML format. Its widespread adoption will require the development of software support to work with SED-ML files. Here, we describe a software tool, SED-ED, to view, edit, validate and annotate SED-ML documents while shieldin...
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models and tacit rule-based models have long been used in product development and safety testing in various engineering disciplines, such as aerospace engineering and electronic circuit design. It can be envisaged that predictive approaches is expected to increase significantly in the coming years in drug discovery too. The extent of omics-scale data and the advances in systems technologies to ...
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ژورنال
عنوان ژورنال: BMC Systems Biology
سال: 2011
ISSN: 1752-0509
DOI: 10.1186/1752-0509-5-198